BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB035D12LP1|AL430052
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 1486 0.0
>3x_Contig1264
Length = 6524
Score = 1486 bits (748), Expect = 0.0
Identities = 775/786 (98%)
Strand = Plus / Plus
Query: 101 aataccctttttaaacaagcyatttgttagtgatacagaagatgagtatgatagtagttc 160
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aataccctttttaaacaagctatttgttagtgatacagaagatgagtatgatagtagttc 60
Query: 161 aagaccatcttcgcctatgctgcgcaagacgggcagcacaaatagtgcaaaaatgttaca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagaccatcttcgcctatgctgcgcaagacgggcagcacaaatagtgcaaaaatgttaca 120
Query: 221 actgccttcaatagtgggcataagtaaagatgatttcccaacctcaaagacagacagcga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actgccttcaatagtgggcataagtaaagatgatttcccaacctcaaagacagacagcga 180
Query: 281 cttcgaagatggccaagaggaacgtcaaccaagatccaaaaaacgagaatcttggttgcm 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttcgaagatggccaagaggaacgtcaaccaagatccaaaaaacgagaatcttggttgca 240
Query: 341 aagactaaaaagtcattcaagatcatctattcgagaataacctgatataccgtaatgttt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagactaaaaagtcattcaagatcatctattcgagaataacctgatataccgtaatgttt 300
Query: 401 gtcacacaatatttcaactttggcaaatgggcatataactgttttctcatcttttttttt 460
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 301 gtcacacaatatttcaactttggcaaatgggcatataactgttttctcatctatgataat 360
Query: 461 kgttgatttcttctttatttttcagttttggttttctggcagttgttatcattgtttgta 520
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 361 ggttgaattcttctttatttttcagttttggttttctggcagttgtaatcattgtttgta 420
Query: 521 ctttcctcatcatatttgccatatgttactacgtaataaaactccaaaaaatgttgtact 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctttcctcatcatatttgccatatgttactacgtaataaaactccaaaaaatgttgtact 480
Query: 581 attataattacagttctttaatgtgcgtttatatatatatatatatccatcactgtcaaa 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 481 attataattacagttctttaatgtgcgtttatatatatatatatatccatcactgtaaaa 540
Query: 641 cagatatctatagatatggaagactagcgatgctcaattaatcgagcaggataagatcat 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagatatctatagatatggaagactagcgatgctcaattaatcgagcaggataagatcat 600
Query: 701 cttcatcagattgtgatgcattcaacttgggtgtctttgttggtggagatggaatactat 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cttcatcagattgtgatgcattcaacttgggtgtctttgttggtggagatggaatactat 660
Query: 761 ttgaaagatgcctcttcaaattattcctttcatcctcggcaggctcatcatctactatca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttgaaagatgcctcttcaaattattcctttcatcctcggcaggctcatcatctactatca 720
Query: 821 gggtttcgatggcttgaatatggtcttcagttctatcttggtctgcatcgacagctgttt 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gggtttcgatggcttgaatatggtcttcagttctatcttggtctgcatcgacagctgttt 780
Query: 881 gttcat 886
||||||
Sbjct: 781 gttcat 786
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,590
Number of Sequences: 1807
Number of extensions: 12590
Number of successful extensions: 1406
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)